| 81 |
PL81-SB-Functional Proteomics |
09/02/2025 |
Ready to Run |
Not yet |
Sreejan Bandyopadhyay |
Functional Proteomics |
Cancer Biology |
ICR |
3 |
3 dilutions for HNSCC non-tryptic … |
Human |
Peptides |
Single shot |
- |
— |
fernandojs |
Peptides were: AGLDWGLLLS AGLPVFAP AYWGQGTL … |
edit |
| 80 |
PL80-MM-Functional Proteomics |
08/28/2025 |
Ready to Run |
Not yet |
Miriam Melake |
Functional Proteomics |
Cancer Biology |
ICR |
6 |
MM39_MHC2 immunopeptidome. From mEER mouse … |
Mouse |
MHC peptides |
IPs TMT |
ACN1 |
— |
zuzak |
Samples will be ready on … |
edit |
| 79 |
PL79-MM-Functional Proteomics |
08/20/2025 |
Running... |
Not yet |
Miriam Melake |
Functional Proteomics |
Cancer Biology |
ICR |
6 |
MM39_MHC1 mEER tumour immunopeptidomes. 6 … |
Mouse |
MHC peptides |
IPs TMT |
ACN1 |
— |
zuzak |
Already running. |
edit |
| 78 |
PL78-BH-Functional Proteomics |
08/10/2025 |
Partially finished |
Not yet |
Brad Hocking |
Functional Proteomics |
Cancer Biology |
ICR |
12 |
BH006 - High/low salt IPs … |
Human |
Pull down |
Single shot |
ACN1 |
— |
bradh |
|
edit |
| 77 |
PL77-MM-Functional Proteomics |
08/15/2025 |
Ready to Run |
Not yet |
Miriam Melake |
Functional Proteomics |
Cancer Biology |
ICR |
2 |
ZKMM_MP ZKMM_MPP Microprotein isolation from … |
Human |
Blood plasma or serum |
Total proteome deep |
ACN1 |
— |
zuzak |
The Premixes have already run … |
edit |
| 76 |
PL76-M-Functional Proteomics |
07/29/2025 |
Finished! |
Not yet |
Miriam/Brad |
Functional Proteomics |
Cancer Biology |
ICR |
24 |
siRNA KDs of TRIM28 From … |
Human |
Cell pellet |
Total proteome deep |
ACN1 |
— |
bradh |
|
edit |
| 75 |
PL75-BH-Choudhary |
07/15/2025 |
Finished! |
Not yet |
Brad Hocking |
Choudhary |
Cancer Biology |
ICR |
8 |
BH204 - Protein painting expt, … |
Human |
Other |
Single shot |
LMS01 |
— |
bradh |
|
edit |
| 74 |
PL74-BH-Functional Proteomics |
06/05/2025 |
Finished! |
Not yet |
Brad Hocking |
Functional Proteomics |
Cancer Biology |
ICR |
46 |
BH003 - Reruns of PRISMA … |
Human |
Pull down |
DIA |
LMS01 |
— |
bradh |
|
edit |
| 73 |
PL73-BH-Functional Proteomics |
06/05/2025 |
Finished! |
Not yet |
Brad Hocking |
Functional Proteomics |
Cancer Biology |
ICR |
2 |
BH203 - Premixes of native … |
Human |
Other |
Single shot |
LMS01 |
— |
bradh |
|
edit |
| 72 |
PL72-BH-Functional Proteomics |
04/10/2025 |
Finished! |
Not yet |
Brad Hocking |
Functional Proteomics |
Cancer Biology |
ICR |
2 |
BH201 - Premixes of denatured … |
Human |
Other |
Single shot |
ACN1 |
— |
bradh |
|
edit |
| 70 |
PL70-SB-Choudhary |
05/22/2025 |
Ready to Run |
Not yet |
Sreejan Bandyopadhyay |
Choudhary |
Cancer Biology |
ICR |
1 |
Tryptic peptides from external collaboration … |
Human |
Peptides |
Single shot |
ACN1 |
RDS FUNCPROT |
fernandojs |
SB02 |
edit |
| 69 |
PL69-SB-Choudhary |
05/22/2025 |
Ready to Run |
Not yet |
Sreejan Bandyopadhyay |
Choudhary |
Cancer Biology |
ICR |
1 |
Non-tryptic non-canonical HLA peptides from … |
Human |
Peptides |
Single shot |
ACN1 |
RDS FUNCPROT |
fernandojs |
SB01 from MEM004 |
edit |
| 68 |
PL68-MP-Choudhary |
05/09/2025 |
Ready to Run |
Not yet |
Mercedes Pardo |
Choudhary |
Cancer Biology |
ICR |
1 |
MP101: ARID1A_N-GFP, ARID1A_C-GFP and GFP … |
Human |
Pull down |
IPs TMT |
- |
— |
fernandojs |
Labelled with TMT10plex #RG234622. Not … |
edit |
| 67 |
PL67-MP-Choudhary |
04/28/2025 |
Ready to Run |
Not yet |
Mercedes Pardo |
Choudhary |
Cancer Biology |
ICR |
307 |
MP100 - ARID1A PRISMA |
Human |
Other |
DIA |
- |
— |
fernandojs |
|
edit |
| 66 |
PL66-BH-Choudhary |
04/14/2025 |
Ready to Run |
Not yet |
Brad Hocking |
Choudhary |
Cancer Biology |
ICR |
15 |
BH105 - Streptavidin pulldown of … |
Human |
Pull down |
IPs TMT |
ACN1 |
— |
bradh |
|
edit |
| 65 |
PL65-AN-Choudhary |
03/19/2025 |
Finished! |
Not yet |
Annalisa Nicastri |
Choudhary |
Cancer Biology |
ICR |
1 |
HCT116 TMT 11plex |
Human |
MHC peptides |
IPs TMT |
ACN1 |
— |
annalisan |
|
edit |
| 64 |
PL64-AN-Choudhary |
03/03/2025 |
Finished! |
Not yet |
Annalisa Nicastri |
Choudhary |
Cancer Biology |
ICR |
2 |
HCT116 label free HCT116 TMT129C … |
Human |
MHC peptides |
IPs TMT |
- |
— |
annalisan |
|
edit |
| 63 |
PL63-AN-Choudhary |
01/21/2025 |
Finished! |
Not yet |
Annalisa Nicastri |
Choudhary |
Cancer Biology |
ICR |
1 |
Mouse_TMT_ testing |
Mouse |
MHC peptides |
IPs TMT |
ACN1 |
— |
annalisan |
|
edit |
| 62 |
PL62-MP-Choudhary |
03/28/2025 |
Ready to Run |
Not yet |
Mercedes Pardo |
Choudhary |
Cancer Biology |
ICR |
307 |
MP99: ARID1A IDR PRISMA |
Human |
Pull down |
DIA |
- |
— |
fernandojs |
Samples resuspended in 32 ul … |
edit |
| 61 |
PL61-MM-Choudhary |
03/27/2025 |
Ready to Run |
Not yet |
Miriam Melake |
Choudhary |
Cancer Biology |
ICR |
18 |
MM29R. Recapture. 18 patient plasma … |
Human |
MHC peptides |
IPs TMT |
ACN1 |
— |
zuzak |
TMTpro for samples MM29R_P1: 126,128N, … |
edit |
| 60 |
PL60-MM-Choudhary |
03/27/2025 |
Running... |
Not yet |
Miriam Melake |
Choudhary |
Cancer Biology |
ICR |
12 |
12 patient plasma immunopeptidomes, 3 … |
Human |
MHC peptides |
IPs TMT |
ACN1 |
— |
zuzak |
Samples are already running with … |
edit |
| 59 |
PL59-CA-Choudhary |
03/06/2025 |
Ready to Run |
Not yet |
Chiara Alesso |
Choudhary |
Cancer Biology |
ICR |
6 |
Repeat CA01 RPE WT and … |
Human |
MHC peptides |
IPs TMT |
LMS01 |
— |
annalisan |
|
edit |
| 58 |
PL58-ED-Choudhary |
02/19/2025 |
Sample Prep |
Not yet |
Eric Deustch |
Choudhary |
Cancer Biology |
ICR |
96 |
synthetic peptides (inhouse) |
Human |
MHC peptides |
Single shot |
ACN1 |
— |
fernandojs |
|
edit |
| 57 |
PL57-ED-Choudhary |
01/22/2025 |
Sample Prep |
Not yet |
Eric Deustch |
Choudhary |
Cancer Biology |
ICR |
2 |
synthetic peptides from external datasets |
Human |
Peptides |
Single shot |
ACN1 |
— |
fernandojs |
|
edit |
| 56 |
PL56-BH-Functional Proteomics |
01/11/2025 |
Finished! |
Not yet |
Brad Hocking |
Functional Proteomics |
Cancer Biology |
ICR |
158 |
BH002C - Replicate 3 CPD … |
Human |
Pull down |
DIA |
FSN |
— |
bradh |
|
edit |