| 57 |
PL57-ED-Choudhary |
01/22/2025 |
Sample Prep |
Not yet |
Eric Deustch |
Choudhary |
Cancer Biology |
ICR |
2 |
synthetic peptides from external datasets |
Human |
Peptides |
Single shot |
ACN1 |
— |
fernandojs |
|
edit |
| 56 |
PL56-BH-Functional Proteomics |
01/11/2025 |
Finished! |
Not yet |
Brad Hocking |
Functional Proteomics |
Cancer Biology |
ICR |
158 |
BH002C - Replicate 3 CPD … |
Human |
Pull down |
DIA |
FSN |
— |
bradh |
|
edit |
| 55 |
PL55-CA-Choudhary |
01/13/2025 |
Running... |
Not yet |
Chiara Alesso |
Choudhary |
Cancer Biology |
ICR |
6 |
RPE WT or RPE ARID1A … |
Human |
MHC peptides |
IPs TMT |
LMS01 |
— |
chiaraa |
|
edit |
| 54 |
PL54-BH-Functional Proteomics |
01/11/2025 |
Finished! |
Not yet |
Brad Hocking |
Functional Proteomics |
Cancer Biology |
ICR |
158 |
BH002B - Replicate 2 CPD … |
Human |
Pull down |
DIA |
FSN |
— |
bradh |
|
edit |
| 53 |
PL53-BH-Functional Proteomics |
01/11/2025 |
Ready to Run |
Not yet |
Brad Hocking |
Functional Proteomics |
Cancer Biology |
ICR |
157 |
BH002A - Replicate 1 CPD … |
Human |
Pull down |
DIA |
FSN |
— |
bradh |
|
edit |
| 52 |
PL52-BH-Functional Proteomics |
01/01/2025 |
Finished! |
Not yet |
Brad Hocking |
Functional Proteomics |
Cancer Biology |
ICR |
173 |
BH001B - TRIM28 Replicate 2 … |
Human |
Pull down |
DIA |
LMS01 |
— |
bradh |
|
edit |
| 51 |
PL51-BH-Functional Proteomics |
01/01/2025 |
Finished! |
Not yet |
Brad Hocking |
Functional Proteomics |
Cancer Biology |
ICR |
173 |
BH001A TRIM28 Replicate 1 PRISMA … |
Human |
Pull down |
DIA |
LMS01 |
— |
bradh |
|
edit |
| 50 |
PL50-MP-Functional Proteomics |
10/23/2024 |
Ready to Run |
Not yet |
Mercedes Pardo |
Functional Proteomics |
Cancer Biology |
ICR |
84 |
MP95 ARID1A PRISMA validation 3-ways |
Human |
Pull down |
DIA |
- |
— |
fernandojs |
These are PRISMA samples, resuspended … |
edit |
| 49 |
PL49-MP-Functional Proteomics |
08/16/2024 |
Ready to Run |
Not yet |
Mercedes Pardo |
Functional Proteomics |
Cancer Biology |
ICR |
6 |
MP92_IPs to identify immunogenic protein |
Human |
Pull down |
Single shot |
- |
— |
fernandojs |
Sample names are: F7, F8, … |
edit |
| 48 |
PL48-FS-Choudhary |
07/12/2024 |
Finished! |
Not yet |
Fernando Sialana |
Choudhary |
Cancer Biology |
ICR |
4 |
DIA and DDA of phosphopeptides |
Human |
Peptides |
Single shot |
ACN1 |
— |
fernandojs |
300ug lysate, C18 cleaned, IMAC … |
edit |
| 47 |
PL47-MP-Functional Proteomics |
06/21/2024 |
Finished! |
Not yet |
Mercedes Pardo |
Functional Proteomics |
Cancer Biology |
ICR |
9 |
MP90 ARID1A_N-GFP, ARID1A_C-GFP and GFP … |
Human |
Pull down |
IPs TMT |
- |
— |
fernandojs |
Labelled with TMT10plex. Not mixed … |
edit |
| 46 |
PL46-MP-Choudhary |
06/17/2024 |
Finished! |
Not yet |
Mercedes Pardo |
Choudhary |
Cancer Biology |
ICR |
2 |
TMT for A and D … |
Human |
Pull down |
IPs TMT |
ACN1 |
— |
fernandojs |
|
edit |
| 45 |
PL45-MP-Choudhary |
05/05/2024 |
Finished! |
Not yet |
Mercedes Pardo |
Choudhary |
Cancer Biology |
ICR |
2 |
ARID1A pulldown |
Human |
Protein complex |
Single shot |
LMS01 |
— |
fernandojs |
|
edit |
| 44 |
PL44-FS-Choudhary |
05/05/2024 |
Finished! |
Not yet |
Fernando Sialana |
Choudhary |
Cancer Biology |
ICR |
4 |
synthesized peptides (CRBN, IKZF3) |
Human |
Peptides |
Single shot |
FSN |
— |
fernandojs |
|
edit |
| 43 |
PL43-M-Choudhary |
04/03/2024 |
Finished! |
Not yet |
Mercedes |
Choudhary |
Cancer Biology |
ICR |
30 |
MP88-PRISMA |
Human |
Pull down |
DIA |
FSN |
— |
fernandojs |
|
edit |
| 42 |
PL42-NM-Choudhary |
03/01/2024 |
Finished! |
Not yet |
Nichol Matthews |
Choudhary |
Cancer Biology |
ICR |
18 |
NM31 |
Human |
Cell pellet |
Total proteome deep |
LMS01 |
— |
fernandojs |
|
edit |
| 41 |
PL41-AN-Choudhary |
02/23/2024 |
Finished! |
Not yet |
Anya Nicholas |
Choudhary |
Cancer Biology |
ICR |
15 |
membrane proteomics for ARID1A KO |
Human |
Cell pellet |
Total proteome deep |
LMS01 |
— |
fernandojs |
|
edit |
| 40 |
PL40-AS-Choudhary |
02/22/2024 |
Finished! |
Not yet |
Aleksandra Stanisic |
Choudhary |
Cancer Biology |
ICR |
4 |
TOX4 ips and IgG control |
Human |
Pull down |
Single shot |
LMS01 |
— |
fernandojs |
|
edit |
| 39 |
PL39-AN-Choudhary |
01/02/2024 |
Finished! |
Not yet |
Anya Nicholas |
Choudhary |
Cancer Biology |
ICR |
2 |
TMT premix membrane proteomics |
Human |
Cell pellet |
Single shot |
LMS01 |
— |
fernandojs |
|
edit |
| 38 |
PL38-AS-Choudhary |
01/27/2024 |
Finished! |
Not yet |
Aleksandra Stanisic |
Choudhary |
Cancer Biology |
ICR |
1 |
IgG TOX1 |
Human |
Pull down |
Single shot |
LMS01 |
— |
fernandojs |
|
edit |
| 37 |
PL37-PB-Frankel |
01/01/2024 |
Running... |
Not yet |
Priyanka Bishwas |
Frankel |
- |
External academic |
15 |
Citrobacter sorted, old mice |
Mouse |
Sorted cells |
Total proteome deep |
LMS01 |
— |
zuzak |
|
edit |
| 36 |
PL36-MM-Functional Proteomics |
01/01/2024 |
To be collected |
Not yet |
Miriam Melake |
Functional Proteomics |
Cancer Biology |
ICR |
4 |
|
Human |
MHC peptides |
Targeted MS2 |
ACN2 |
— |
fernandojs |
|
edit |
| 35 |
PL35-MP-Functional Proteomics |
12/13/2023 |
Ready to Run |
Not yet |
Mercedes Pardo |
Functional Proteomics |
Cancer Biology |
ICR |
54 |
PRISMA eluate samples (MP88) |
Human |
Pull down |
DIA |
FSN |
— |
fernandojs |
Please run same amount and … |
edit |
| 34 |
PL34-MP-Functional Proteomics |
12/01/2023 |
Ready to Run |
Not yet |
Mercedes Pardo |
Functional Proteomics |
Cancer Biology |
ICR |
3 |
MP87_S, MP87_N, MP87_Rb SIN3A, NFIC … |
Human |
Pull down |
Single shot |
- |
— |
fernandojs |
Please run in order R, … |
edit |
| 33 |
PL33-ZK-Choudhary |
01/01/2023 |
To be collected |
Not yet |
Zuza Kozik |
Choudhary |
Cancer Biology |
ICR |
18 |
SET02 RPE1 wt (KC)_R1 RPE1 … |
Human |
Cell pellet |
Total proteome shallow & Phosphoproteome |
ACN1 |
— |
zuzak |
|
edit |